Overides energy function and report functions.
The energy function solves ODEs and computes a least-squares score. Ticker functions are called on completion of a generation and when optimization finishes.
Methods
Best1Bin(candidate) | |
Best1Exp(candidate) | |
Best2Bin(candidate) | |
Best2Exp(candidate) | |
EnergyFunction(trial) | |
GetClassRandomFloatBetweenZeroAndOne() | |
GetClassRandomIntegerBetweenZeroAndParameterCount() | |
GetClassRandomIntegerBetweenZeroAndPopulationSize() | |
GetRandFloatIn01() | |
GetRandIntInPars() | |
GetRandIntInPop() | |
Rand1Bin(candidate) | |
Rand1Exp(candidate) | |
Rand2Bin(candidate) | |
Rand2Exp(candidate) | |
RandToBest1Bin(candidate) | |
RandToBest1Exp(candidate) | |
SelectSamples(candidate, n) | Select n different members of population which are different from candidate. |
SetupClassRandomNumberMethods() | |
computeGeneration() | |
computeSolution(i, trial[, dense]) | Computes solution for timecourse i, given parameters trial. |
externalEnergyFunction(trial) | |
finalize() | |
genIndxOfGenesToXover() | |
generateOptimumData() | |
generation_string(generation) | |
reportFinal() | |
reportFinalString() | |
reportGeneration() | |
reportGenerationString() | |
reportInitial() | |
reportInitialString() | |
run() |
Methods
Best1Bin(candidate) | |
Best1Exp(candidate) | |
Best2Bin(candidate) | |
Best2Exp(candidate) | |
EnergyFunction(trial) | |
GetClassRandomFloatBetweenZeroAndOne() | |
GetClassRandomIntegerBetweenZeroAndParameterCount() | |
GetClassRandomIntegerBetweenZeroAndPopulationSize() | |
GetRandFloatIn01() | |
GetRandIntInPars() | |
GetRandIntInPop() | |
Rand1Bin(candidate) | |
Rand1Exp(candidate) | |
Rand2Bin(candidate) | |
Rand2Exp(candidate) | |
RandToBest1Bin(candidate) | |
RandToBest1Exp(candidate) | |
SelectSamples(candidate, n) | Select n different members of population which are different from candidate. |
SetupClassRandomNumberMethods() | |
__init__(model, optSettings, tcs[, weights, ...]) | |
computeGeneration() | |
computeSolution(i, trial[, dense]) | Computes solution for timecourse i, given parameters trial. |
externalEnergyFunction(trial) | |
finalize() | |
genIndxOfGenesToXover() | |
generateOptimumData() | |
generation_string(generation) | |
reportFinal() | |
reportFinalString() | |
reportGeneration() | |
reportGenerationString() | |
reportInitial() | |
reportInitialString() | |
run() |
Attributes
exitCodeStrings |