Research

Funded Projects

Supervision of Doctoral Projects

  • Muhamed Asif, Systems Medicine approach to improve diagnosis and prognosis in Autism Spectrum Disorders (ASD), based on extensive genomic, biochemical and clinical data, supported by FCT (BioSys-PhD Programme), supervisor Astrid Vicente, 2018
  • João Ferreira, Semantic Similarity across Biomedical Ontologies, supported by FCT scholarship SFRH/BD/69345/2010, 2016
  • Hugo Bastos, Robustness Analysis Methods for Enzyme Functional Prediction, supported by FCT scholarship SFRH/BD/48035/2008, co-supervisor Luka Clarke, 2015
  • Miguel Costa, Information Search in Web Archives, supervisor Mário J. Silva, 2014
  • Catia Machado, Integration and Exploration of Clinical and Biological data about HCM disease, supported by FCT scholarship SFRH/BD/65257/2009, co-supervisor Ana Teresa Freitas, 2014
  • Tiago Grego, Identifying Chemical Entities on Literature: a Machine Learning Approach using Dictionaries as Domain Knowledge, supported by FCT scholarship SFRH/BD/36015/2007, 2013
  • Catia Pesquita, Automated Extension of Biomedical Ontologies, supported by FCT scholarship SFRH/BD/42481/2007, 2012
Ongoing
  • Márcia Barros, Big Data Visualization of Stars in our Galaxy, supported by GAIA Mission from ESA (European Space Agency) since 2016, co-supervisor André Moitinho de Almeida
  • Maria Fernandes, Privacy-preserving algorithms and workflows for next-generation genomics, since 2016, supervisor Paulo Verissimo
  • André Lamurias, Development of a Text Mining Approach to Disease Network Discovery, supported by FCT (BioSys-PhD Programme) between 2015 and 2019, co-supervisor Luka Clarke

Theses Supervised available at the ULisboa Repository

Invited Talks